Metagenomic analysis of microbial communities associated with marine macroalga
It is known to us that, marine macroalgae depends on the co-existing microbes for their health and growth. Metagenomic analysis of sample data sets will be carried out to investigate the functional and taxonomic diversity of macroalgal-associated microbiomes and how they correlate with growth or disease. Contemporary bioinformatics and biostatistics approach like genome reconstruction and annotation, metabolic modelling and generalised-linear models for multivariate datasets can be applied. Available metabolic data of the samples could also be integrated with the metagenomic data. Finally, specific hypotheses can be tested derived from the metagenomic observations, such that any organism of the microbial community carries a specific function that is important/essential for a specific macroalgal host. This will lead to design function-based and metagenomic-informed probiotics that can support growth of and provide disease-resistance for macroalgae.
Supervisor: Professor Torsten Thomas
Saha ML, Akter MD, Khan T, Ansari A and Islam MN. 2018. Bacterial load and multi-drug resistance pattern of some ready-to-eat street foods of Dhaka city. Dhaka Univ. J. Biol. Sci. 27(1): 27-36.
Eshik MME, Punom NJ, Begum MK, Khan T, Saha ML and Rahman MS. 2018. Molecular characterization of Acute Hepatopancreatic Necrosis Disease causing Vibrio parahaemolyticus strains in cultured Shrimp Penaeus monodon in south-west farming region of Bangladesh. Dhaka Univ. J. Biol. Sci. 27(1): 57-68.
Khan T, Mahbub MA, Mitra S, Ali NM, Biswas A, Islam T and Saha ML. 2017. Rhizosphere associated bacteria and soil physico-chemical properties of Tea garden. Bangladesh J. Bot. 46(44): 1389-1396.
Khan T and Saha ML. 2017. Production and optimization of alkaline protease by Bacillus spp. isolated from tannery industry and potential biotechnological application of the enzyme. Imper. J. Interdiscip. Res. 3(11): 258-265.
Saha ML, Mahbub MA, Khan T, Moniruzzaman M and Hoque S. 2017. Bacteria and chemical pollution level of the river Turag, Gazipur, Bangladesh. Dhaka Univ. J. Biol. Sci. 26(1): 1-11.
Sarder H, Khan T, Saha ML, Punom NJ, Mandal SC and Rahman MS. 2016. Prevalence and antibiotic susceptibility of Aeromonas hydrophila isolated from freshwater fishes. J. Fish. 4(3): 411-419.
Saha ML, Khan T, Kamal MM and Islam MN. 2015. Proteolytic Bacillus spp. associated with tannery industries: conventional and molecular identification. Bangladesh J. Bot. 44(4): 557-564.
Level 5 EastBiological Sciences North (D26)UNSW, Kensington 2052